Stem-loop pab-MIR482s

Accession

MI0036762

Description

Picea abies pab-MIR482s precursor miRNA

Literature search

1 open access papers mention pab-MIR482s
(5 sentences)

Sequence

uggcaacucucguuagcugaaacucuacaaguuugcgugauugguguguauggaguggccccguuggaaaaaucuuguugcucgauauuaucuacauugacuacaaagugauugaugcgucuugauacucugauuuggucacagucucucaaguuuguugagggaaaaauaacuuagagauggaugaaauucaguuuacagaguaaaauuuuuuauucauaucuaaguugauuccuugaacaauuuugagagacugugagccaaaucacaauaucaugcauacaucacugaccuuguaaguguuguauuguagacuauuuugagcaacgaugUCUUUCCAACGCCGCCCAUUCCauauacaccgaucacgccuacuugugggguuucagcuaacaaagaguauuca
.....(((((.(((((((((((((((((((((..(((((((((((((((((((((((((..(((((((((.((.(((((((((((.((..((((((.(((((((((((((((..(((((...(((((...(((((((((((((((((((((((.(((((.((((((...(((((((((.((((((((((.....(((((...)))))...)))))))))).))))))))).)))))).))))).))))))))))))))).))))))))...))))))))))..))))))....)))))...))))...))))))..)).))))))))))).)).)))))))))..).))))))))))))))))))))))))..)))))))))))))))))))))..))))).....

Structure

uggca     -c                     uu                        - cc         a  c           u  ua      --u    ---     ----      ug     ucu     cuc        -               u     g      aaa         g          uucag     a 
     acucu  guuagcugaaacucuacaagu  gcgugauugguguguauggagugg c  cguuggaaa au uuguugcucga au  ucuaca   ugac   uacaa    agugau  augcg   ugaua   ugauuugg ucacagucucucaag uuguu agggaa   uaacuuaga auggaugaaa     uuuac  
     |||||  |||||||||||||||||||||  |||||||||||||||||||||||| |  ||||||||| || ||||||||||| ||  ||||||   ||||   |||||    ||||||  |||||   |||||   |||||||| ||||||||||||||| ||||| ||||||   ||||||||| ||||||||||     ||||| g
     ugaga  caaucgacuuugggguguuca  cgcacuagccacauauaCCUUACC G  GCAACCUUU Ug agcaacgaguu ua  agaugu   guug   auguu    ucacua  uacgu   acuau   acuaaacc agugucagagaguuu aacaa uuccuu   guugaaucu uacuuauuuu     aaaug  
acuua     aa                     uc                        C CC         C  u           u  uc      uau    uga     ccag      ca     ---     aac        g               u     g      --a         a          --uua     a 

Annotation confidence Not enough data

Genome context

MA_789115: 1133-1538 [+]

Mature pab-miR482s

• Accession: MIMAT0044860
• Description: Picea abies pab-miR482s mature miRNA
• Sequence: 333 - UCUUUCCAACGCCGCCCAUUCC - 354
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918