Stem-loop pab-MIR11406

Accession

MI0036764

Description

Picea abies pab-MIR11406 precursor miRNA

Sequence

2431 reads, 214.0 reads per million, 87 experiments

aaugggauuccggucuaucUUGACCAAGUUGGAGAUGAUCuaugcagcggccgggcgcuugcgaaaaaugaucgguuugcauuagagauauugagggagaucagaacaaugcgaggcgugguggagaugcugaaaugggaaaaaguucacgagcaggagauucgaggaggggcugcagagaucaucUCCAACAUGGUCAAGAUAGACcggaauagcauu
((((..((((((((((((((((((((.((((((((((((((.((((((.((((.((.((((((.....(((((......((.((....)).)).....)))))......)))))))).))))(((..(.(((.....(((.....))).....))).)..)))........)))))).)))))))))))))).))))))))))))))))))))..))))

Structure

    gg                    A              a      ------------------------------------------------g    g  g      -aaaaa     gguuug  u  g 
aaug  auuccggucuaucUUGACCA GUUGGAGAUGAUCu ugcagc                                                 gccg gc cuugcg      ugauc      ca ua a
||||  |||||||||||||||||||| |||||||||||||| ||||||                                                 |||| || ||||||      |||||      || ||  
uuac  uaaggcCAGAUAGAACUGGU CAACCUcuacuaga acgucg                                                 uggu cg gagcgu      acuag      gu au g
    ga                    A              g      gggaggagcuuagaggacgagcacuugaaaaaggguaaagucguagagg    g  -      aacaag     -aggga  u  a 

Annotation confidence Medium

Genome context

MA_10432864: 4033-4251 [-]

Mature pab-miR11406-5p

• Accession: MIMAT0044862
• Description: Picea abies pab-miR11406-5p mature miRNA
• Sequence: 20 - UUGACCAAGUUGGAGAUGAUC - 40
• Evidence: experimental ; Illumina [1]

Mature pab-miR11406-3p

• Accession: MIMAT0057592
• Description: Picea abies pab-miR11406-3p mature miRNA
• Sequence: 187 - UCCAACAUGGUCAAGAUAGAC - 207
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918