Stem-loop pab-MIR529d

Accession

MI0036768

Description

Picea abies pab-MIR529d precursor miRNA

Sequence

881 reads, 67.0 reads per million, 53 experiments

gccucgccggagucuuaaccCGAAGAGAGAGAGCACCGCCUcgaaucuuaaaccugcaaugauccaugucacauauuuggacuggagaagagGAGGUGCUCUCUCUCUUCACGuuuaggcgcuuccggcgauaugc
((.((((((((((((.(((..((((((((((((((((.((((....................((((.(((.((....)))))))))...)))).))))))))))))))))..))).))))...))))))))...))

Structure

  --c        ---    u   cC                G    gaaucuuaaaccugcaauga    u   a  u 
gc   ucgccgga   gucu aac  GAAGAGAGAGAGCACC CCUc                    ucca guc ca a
||   ||||||||   |||| |||  |||||||||||||||| ||||                    |||| ||| ||  
cg   agcggccu   cgga uuG  CUUCUCUCUCUCGUGG Ggag                    aggu cag gu u
  uau        ucg    u   CA                A    -----------------aag    -   -  u 

Annotation confidence High

Genome context

MA_177980: 1711-1846 [-]

Mature pab-miR529d-5p

• Accession: MIMAT0044866
• Description: Picea abies pab-miR529d-5p mature miRNA
• Sequence: 21 - CGAAGAGAGAGAGCACCGCCU - 41
• Evidence: experimental ; Illumina [1]

Mature pab-miR529d-3p

• Accession: MIMAT0057595
• Description: Picea abies pab-miR529d-3p mature miRNA
• Sequence: 93 - GAGGUGCUCUCUCUCUUCACG - 113
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918