Stem-loop pab-MIR529f

Accession

MI0036770

Description

Picea abies pab-MIR529f precursor miRNA

Sequence

1948 reads, 94.0 reads per million, 70 experiments

cgccagagucugaaccAGAAGAGAGAGAGCACCGCCUcucauauuugauccaucucgcauauuuggaguggagaagagGAGGUGCUCUCUCUCUUCACGuucuggcg
(((((((......((..((((((((((((((((.(((((.........((((.(((.((....)))))))))..))))).))))))))))))))))..)))))))))

Structure

       gucuga  cA                G     cauauuuga    u   g  u 
cgccaga      ac  GAAGAGAGAGAGCACC CCUcu         ucca cuc ca a
|||||||      ||  |||||||||||||||| |||||         |||| ||| ||  
gcggucu      uG  CUUCUCUCUCUCGUGG Ggaga         aggu gag gu u
       ------  CA                A     -------ag    -   -  u 

Annotation confidence High

Genome context

MA_13070: 54645-54751 [-]

Mature pab-miR529f-5p

• Accession: MIMAT0044868
• Description: Picea abies pab-miR529f-5p mature miRNA
• Sequence: 17 - AGAAGAGAGAGAGCACCGCCU - 37
• Evidence: experimental ; Illumina [1]

Mature pab-miR529f-3p

• Accession: MIMAT0057596
• Description: Picea abies pab-miR529f-3p mature miRNA
• Sequence: 79 - GAGGUGCUCUCUCUCUUCACG - 99
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918