Stem-loop pab-MIR529g

Accession

MI0036771

Description

Picea abies pab-MIR529g precursor miRNA

Sequence

1932 reads, 92.0 reads per million, 71 experiments

gccucgccagagucugaaccAGAAGAGAGAGAGCACCGCCUcuaaucuuaaaccugcaaugacccgucuuacauauuugcaguggagaagagGAGGUGCUCUCUCUCUUCAuguucaggugauuccggcgauaugc
((.(((((.((((((((((..((((((((((((((((.(((((..((((....((((((.................))))))..))))))))).))))))))))))))))..)))))...))))).)))))...))

Structure

  --c     a     ---     cA                G     aa    aaac      ugacccg 
gc   ucgcc gaguc   ugaac  GAAGAGAGAGAGCACC CCUcu  ucuu    cugcaa       u
||   ||||| |||||   |||||  |||||||||||||||| |||||  ||||    ||||||       c
cg   agcgg cuuag   acuug  CUUCUCUCUCUCGUGG Ggaga  agag    gacguu       u
  uau     c     ugg     uA                A     --    --gu      uauacau 

Annotation confidence High

Genome context

MA_17410: 36343-36478 [-]

Mature pab-miR529g-5p

• Accession: MIMAT0044869
• Description: Picea abies pab-miR529g-5p mature miRNA
• Sequence: 21 - AGAAGAGAGAGAGCACCGCCU - 41
• Evidence: experimental ; Illumina [1]

Mature pab-miR529g-3p

• Accession: MIMAT0057597
• Description: Picea abies pab-miR529g-3p mature miRNA
• Sequence: 93 - GAGGUGCUCUCUCUCUUCA - 111
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918