Stem-loop pab-MIR529i

Accession

MI0036773

Description

Picea abies pab-MIR529i precursor miRNA

Sequence

1937 reads, 94.0 reads per million, 70 experiments

gccucgccagagucugaaccAGAAGAGAGAGAGCACCGCCUcuaagcuuaaaccugcaaugacccgucuuacauauuugcaguggagaagagGAGGUGCUCUCUCUCUUCAuguucaggugauuccggcgauaugc
((.(((((.((((((((((..((((((((((((((((.(((((...(((....((((((.................))))))..))).))))).))))))))))))))))..)))))...))))).)))))...))

Structure

  --c     a     ---     cA                G     aag   aaac      ugacccg 
gc   ucgcc gaguc   ugaac  GAAGAGAGAGAGCACC CCUcu   cuu    cugcaa       u
||   ||||| |||||   |||||  |||||||||||||||| |||||   |||    ||||||       c
cg   agcgg cuuag   acuug  CUUCUCUCUCUCGUGG Ggaga   gag    gacguu       u
  uau     c     ugg     uA                A     --a   --gu      uauacau 

Annotation confidence High

Genome context

MA_491793: 4450-4585 [+]

Mature pab-miR529i-5p

• Accession: MIMAT0044871
• Description: Picea abies pab-miR529i-5p mature miRNA
• Sequence: 21 - AGAAGAGAGAGAGCACCGCCU - 41
• Evidence: experimental ; Illumina [1]

Mature pab-miR529i-3p

• Accession: MIMAT0057598
• Description: Picea abies pab-miR529i-3p mature miRNA
• Sequence: 93 - GAGGUGCUCUCUCUCUUCA - 111
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918