Stem-loop pab-MIR529j

Accession

MI0036774

Description

Picea abies pab-MIR529j precursor miRNA

Sequence

4542 reads, 160.0 reads per million, 54 experiments

cggcagCAGAAGAGAGAGAGCACAGCCccucuuugaacaaaacgcagacugaaaugucagugcagcagCGGUGCUCUCUCUCUUCUUCUcucg
(((.((.((((((((((((((((.((..((.............((..(((((....)))))))))..)).)))))))))))))))).)).)))

Structure

   c  C                A  Cc  cuuugaacaaaac  ag     a 
cgg ag AGAAGAGAGAGAGCAC GC  cu             gc  acuga a
||| || |||||||||||||||| ||  ||             ||  |||||  
gcu UC UCUUCUCUCUCUCGUG Cg  ga             cg  ugacu u
   c  U                G  ac  -------------  --     g 

Annotation confidence High

Genome context

MA_58754: 46187-46279 [+]

Mature pab-miR529j-5p

• Accession: MIMAT0044872
• Description: Picea abies pab-miR529j-5p mature miRNA
• Sequence: 7 - CAGAAGAGAGAGAGCACAGCC - 27
• Evidence: experimental ; Illumina [1]

Mature pab-miR529j-3p

• Accession: MIMAT0057599
• Description: Picea abies pab-miR529j-3p mature miRNA
• Sequence: 69 - CGGUGCUCUCUCUCUUCUUCU - 89
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918