Stem-loop pab-MIR529k

Accession

MI0036775

Description

Picea abies pab-MIR529k precursor miRNA

Sequence

2040 reads, 100.0 reads per million, 69 experiments

ucgccagagucugaaccAGAAGAGAGAGAGCACCGCCUcuaaucuuaaaccugcaaugauccaucuuacauauuugcaguggagaagagGAGGUGCUCUCUCUCUUCACGuucagguguuuucggcga
((((((((((((((((..((((((((((((((((.(((((..((((....((((((.................))))))..))))))))).))))))))))))))))..)))))))..)))).)))))

Structure

     -    --       cA                G     aa    aaac      ugaucca 
ucgcc agag  ucugaac  GAAGAGAGAGAGCACC CCUcu  ucuu    cugcaa       u
||||| ||||  |||||||  |||||||||||||||| |||||  ||||    ||||||       c
agcgg uuuu  ggacuuG  CUUCUCUCUCUCGUGG Ggaga  agag    gacguu       u
     c    gu       CA                A     --    --gu      uauacau 

Annotation confidence High

Genome context

MA_6305555: 91-218 [+]

Mature pab-miR529k-5p

• Accession: MIMAT0044873
• Description: Picea abies pab-miR529k-5p mature miRNA
• Sequence: 18 - AGAAGAGAGAGAGCACCGCCU - 38
• Evidence: experimental ; Illumina [1]

Mature pab-miR529k-3p

• Accession: MIMAT0057600
• Description: Picea abies pab-miR529k-3p mature miRNA
• Sequence: 90 - GAGGUGCUCUCUCUCUUCACG - 110
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918