Stem-loop pab-MIR529l

Accession

MI0036776

Description

Picea abies pab-MIR529l precursor miRNA

Sequence

1975 reads, 100.0 reads per million, 67 experiments

ggaggccucgccagagucugaaccAGAAGAGAGAGAGCACCGCCUcuaaucuuaaaccugcaaugauccaucuuacauauuugcagugaagagGAGGUGCUCUCUCUCUUCACGuucagguguuucaggcagaucgcuuacu
..((((.(((((.((((((((((..((((((((((((((((.(((((....(((...((((((.................)))))))))))))).))))))))))))))))..)))))))...))).))).))..))))...

Structure

-gg    -c  -   a   ---       cA                G     aauc   aac      ugaucca 
   aggc  uc gcc gag   ucugaac  GAAGAGAGAGAGCACC CCUcu    uua   cugcaa       u
   ||||  || ||| |||   |||||||  |||||||||||||||| |||||    |||   ||||||       c
   uucg  ag cgg cuu   ggacuuG  CUUCUCUCUCUCGUGG Ggaga    agu   gacguu       u
uca    cu  a   a   ugu       CA                A     ----   ---      uauacau 

Annotation confidence High

Genome context

MA_63628: 1744-1885 [-]

Mature pab-miR529l-5p

• Accession: MIMAT0044874
• Description: Picea abies pab-miR529l-5p mature miRNA
• Sequence: 25 - AGAAGAGAGAGAGCACCGCCU - 45
• Evidence: experimental ; Illumina [1]

Mature pab-miR529l-3p

• Accession: MIMAT0057601
• Description: Picea abies pab-miR529l-3p mature miRNA
• Sequence: 94 - GAGGUGCUCUCUCUCUUCACG - 114
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918