Stem-loop pab-MIR529n

Accession

MI0036778

Description

Picea abies pab-MIR529n precursor miRNA

Sequence

2010 reads, 94.0 reads per million, 71 experiments

gccucgccagagucugaaccAGAAGAGAGAGAGCACCGCCUcuaaucuuaaaccuccaaugauccaucuuacauauuuggaguggagaagagGAGGUGCUCUCUCUCUUCACGuucagguguuucaggcgauaugc
((.(((((.((((((((((..((((((((((((((((.(((((..((((....((((((.................))))))..))))))))).))))))))))))))))..)))))))...))).)))))...))

Structure

  --c     a   ---       cA                G     aa    aaac      ugaucca 
gc   ucgcc gag   ucugaac  GAAGAGAGAGAGCACC CCUcu  ucuu    cuccaa       u
||   ||||| |||   |||||||  |||||||||||||||| |||||  ||||    ||||||       c
cg   agcgg cuu   ggacuuG  CUUCUCUCUCUCGUGG Ggaga  agag    gagguu       u
  uau     a   ugu       CA                A     --    --gu      uauacau 

Annotation confidence High

Genome context

MA_799732: 3175-3310 [-]

Mature pab-miR529n-5p

• Accession: MIMAT0044876
• Description: Picea abies pab-miR529n-5p mature miRNA
• Sequence: 21 - AGAAGAGAGAGAGCACCGCCU - 41
• Evidence: experimental ; Illumina [1]

Mature pab-miR529n-3p

• Accession: MIMAT0057602
• Description: Picea abies pab-miR529n-3p mature miRNA
• Sequence: 93 - GAGGUGCUCUCUCUCUUCACG - 113
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918