Stem-loop pab-MIR535a

Accession

MI0036781

Description

Picea abies pab-MIR535a precursor miRNA

Sequence

39713 reads, 2658.0 reads per million, 100 experiments

uggaagauauuugggUGACAACGAGAGAGAGCACGCuuguggaaauccauggacauucauguaaaauacaugugucuacagGCGUGCUCUCUUGUUGUCACCcgaauuuuguuca
..(((.(.((((((((((((((..((((((((((((((((((....)))((((((..((((((...)))))))))))))))))))))))))))))))))))))))))..).))).

Structure

ug   g -u              GA               uggaaaucca      uu      a 
  gaa a  auuugggUGACAAC  GAGAGAGCACGCuug          uggaca  caugua  
  ||| |  ||||||||||||||  |||||||||||||||          ||||||  |||||| a
  cuu u  uaagcCCACUGUUG  UUCUCUCGUGCGgac          aucugu  guacau  
-a   g uu              --               ----------      --      a 

Annotation confidence High

Genome context

MA_10219691: 1831-1945 [+]

Mature pab-miR535a-5p

• Accession: MIMAT0044879
• Description: Picea abies pab-miR535a-5p mature miRNA
• Sequence: 16 - UGACAACGAGAGAGAGCACGC - 36
• Evidence: experimental ; Illumina [1]

Mature pab-miR535a-3p

• Accession: MIMAT0057604
• Description: Picea abies pab-miR535a-3p mature miRNA
• Sequence: 82 - GCGUGCUCUCUUGUUGUCACC - 102
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918