Stem-loop pab-MIR535c

Accession

MI0036783

Description

Picea abies pab-MIR535c precursor miRNA

Sequence

34687 reads, 2399.0 reads per million, 100 experiments

uuucguggauaauauuugggUGACAACGAGAGAGAGCACGCuaguggaaauucauggacauuuauguacaauacaggcGUGAACUCUCUUGUUGUCACCcaaaauauguucaugaga
(((((((((((...((((((((((((((((((((..((((((.(((......(((((....))))).....))).))))))..))))))))))))))))))))...)))))))))))

Structure

           aua                    AG      a   gaaauu     a 
uuucguggaua   uuugggUGACAACGAGAGAG  CACGCu gug      caugg c
|||||||||||   ||||||||||||||||||||  |||||| |||      |||||  
agaguacuugu   aaacCCACUGUUGUUCUCUC  GUGcgg cau      guauu a
           aua                    AA      a   -aacau     u 

Annotation confidence High

Genome context

MA_6594514: 92-208 [-]

Mature pab-miR535c-5p

• Accession: MIMAT0044881
• Description: Picea abies pab-miR535c-5p mature miRNA
• Sequence: 21 - UGACAACGAGAGAGAGCACGC - 41
• Evidence: experimental ; Illumina [1]

Mature pab-miR535c-3p

• Accession: MIMAT0057606
• Description: Picea abies pab-miR535c-3p mature miRNA
• Sequence: 79 - GUGAACUCUCUUGUUGUCACC - 99
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918