Stem-loop pab-MIR946a

Accession

MI0036787

Description

Picea abies pab-MIR946a precursor miRNA

Literature search

2 open access papers mention pab-MIR946a
(5 sentences)

Sequence

367428 reads, 11449.0 reads per million, 102 experiments

aauugaugcguucacaguguacagaUGUGGAUAUAGGAGGGUUAGUuagcacauauauacaaaacccauuuaauagagauucugugagagcaucuuauuguagauuguuggcuauucgagaucaaacaaccguguucaaucaacuuauuguagauuguuggcuauucgagaucaaacaaccguguucaaucaaaugcauuuugauggccauacucaucaaauggguugccuguuugucuuuaCCAGCCCUUCUGCUAUCCACAaccguaguaguuuguucacaucaauu
((((((((.(..((.(.(((((.(.((((((((((((((((((.((.((.(((.(((.....(((((((((.((.(((..(((.(((((((((((......)))).....))).)))))))...((((....))))(((((.((.....)).))))).(((((((.((((((((((((....))))........)).)))))))))))))..))))).)))))))))...))).)))))..)).)))))))))).)))))))).).))).)).).))..).))))))))

Structure

        c uu  c g  -   a a        -          A  -u  c   u   uacaa         a  a   -----------------------------------------------------------------------------------------au   g    -   -----    ua 
aauugaug g  ca a ug uac g UGUGGAUA UAGGAGGGUU GU  ag aca aua     aacccauuu au gag                                                                                           ucu ugag agc     aucu  u
|||||||| |  || | || ||| | |||||||| |||||||||| ||  || ||| |||     ||||||||| || |||                                                                                           ||| |||| |||     ||||   
uuaacuac c  gu u au aug c ACACCUAU GUCUUCCCGA Ca  uc ugu ugu     uuggguaaa ua cuc                                                                                           aga gcuu ucg     uaga  u
        a uu  u g  g   c a        C          C  uu  -   u   --ccg         c  -   auaccgguaguuuuacguaaacuaacuugugccaacaaacuagagcuuaucgguuguuagauguuauucaacuaacuugugccaacaaacu   -    a   guugu    ug 

Annotation confidence High

Genome context

MA_10431262: 8431-8719 [-]

Mature pab-miR946a-5p

• Accession: MIMAT0044885
• Description: Picea abies pab-miR946a-5p mature miRNA
• Sequence: 26 - UGUGGAUAUAGGAGGGUUAGU - 46
• Evidence: experimental ; Illumina [1]

Mature pab-miR946a-3p

• Accession: MIMAT0057608
• Description: Picea abies pab-miR946a-3p mature miRNA
• Sequence: 243 - CCAGCCCUUCUGCUAUCCACA - 263
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918