Stem-loop pab-MIR946b

Accession

MI0036788

Description

Picea abies pab-MIR946b precursor miRNA

Literature search

1 open access papers mention pab-MIR946b
(4 sentences)

Sequence

367266 reads, 11429.0 reads per million, 102 experiments

guacagaUGUGGAUAUAGGAGGGUUAGUuagcacauauauacaaaacccauuuaauagaguuucugugagagcaucuuauuguagauuguuggcuauucgagaucaaacaaccguguucaaucaaaugcauuuugauggccauacucaucaaauggguugucuguuugucuuuaCCAGCCCUUCUGCUAUCCACAaccguau
((((.(.((((((((((((((((((.((.((.(((.(((.(((..((((((((.((.((((.(((((((((...))))))...)))....(((((((.((((((((((((....))))........)).))))))))))))).)))))).))))))))))).))).)))))..)).)))))))))).)))))))).).))))

Structure

    a a        -          A  -u  c   u   u   aa        a  a    uucugugagagcaucuuauuguagauugu       u      -  --------    a 
guac g UGUGGAUA UAGGAGGGUU GU  ag aca aua aca  acccauuu au gagu                             uggcuau cgagau ca        aaca c
|||| | |||||||| |||||||||| ||  || ||| ||| |||  |||||||| || ||||                             ||||||| |||||| ||        ||||  
uaug c ACACCUAU GUCUUCCCGA Ca  uc ugu ugu ugu  uggguaaa ua cuca                             accggua guuuua gu        uugu c
    c a        C          C  uu  -   u   c   --        c  -    ----------------------------u       -      c  aaacuaac    g 

Annotation confidence High

Genome context

MA_10433553: 13244-13445 [-]

Mature pab-miR946b-5p

• Accession: MIMAT0044886
• Description: Picea abies pab-miR946b-5p mature miRNA
• Sequence: 8 - UGUGGAUAUAGGAGGGUUAGU - 28
• Evidence: experimental ; Illumina [1]

Mature pab-miR946b-3p

• Accession: MIMAT0057609
• Description: Picea abies pab-miR946b-3p mature miRNA
• Sequence: 175 - CCAGCCCUUCUGCUAUCCACA - 195
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918