Stem-loop pab-MIR946c

Accession

MI0036789

Description

Picea abies pab-MIR946c precursor miRNA

Literature search

1 open access papers mention pab-MIR946c
(4 sentences)

Sequence

aauugauguguucagauuguacagauguggauauggaagggcuagguaacauaaaauacaaaaccaauuuaaugcagauugcacaagggccaucuuauuguagauuguugguuguuugagaucaagcaacucuguaccagcagcuguauuuagauggccaugcucauuggguugccuuuugcucuuuaCCAGCCCUUCUGCUAUCCACAUucguacuaauuuguccacaucaauu
((((((((((..((((((((((.((((((((((((((((((((.(((((..(((((..(((..(((((....((((...))))....((((((((...(((((.((((((((((((((....)))))).......)))))))))))))...))))))))......))))).)))..)))))....))))))))))))))).)))))))))).)))).))))))..))))))))))

Structure

          uu      -    a          -          a     --ca     ua   aa     uuaaugcagauugcacaag        uau     a        -------      a 
aauugaugug  cagauu guac gauguggaua uggaagggcu gguaa    uaaaa  caa  ccaau                   ggccaucu   uguag uuguuggu       uguuug g
||||||||||  |||||| |||| |||||||||| |||||||||| |||||    |||||  |||  |||||                   ||||||||   ||||| ||||||||       ||||||  
uuaacuacac  guuuaa caug uUACACCUAU GUCUUCCCGA CCauu    guuuu  guu  gguua                   ccgguaga   auguc gacgacca       acgaac a
          cu      u    c          C          -     ucuc     cc   -g     -------------cucgua        uuu     -        ugucuca      u 

Annotation confidence Not enough data

Genome context

MA_10434984: 2599-2833 [+]

Mature pab-miR946c

• Accession: MIMAT0044887
• Description: Picea abies pab-miR946c mature miRNA
• Sequence: 189 - CCAGCCCUUCUGCUAUCCACAU - 210
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918