Stem-loop pab-MIR946f

Accession

MI0036792

Description

Picea abies pab-MIR946f precursor miRNA

Literature search

1 open access papers mention pab-MIR946f
(4 sentences)

Sequence

97683 reads, 2471.0 reads per million, 102 experiments

uugaugcguucacaguguacagaUGUGGAUAUAGGAGGGUUAGUuagcacauauauacaaaacccauuuaauagaguuucugugagagcaucuuauuguagauuguuggcuauucgagaucaaacaacuuauuguagauuguuggcuauucgagaucaaacaaccguguucaaucaacugcauuuugauggccauacucaucaaaugguuugccuguuugucuuuaCCAGCCCUUAUGCUAUCCACAaccuuauuaguagauuguugacuguucaa
.(((.(((.(((((((.(((((.((((((((((.(((((((.((.((.(((.(((..((((..((((((.((.((((.(((.(((((((((((......)))).....))).)))))))...(((((((......)).)))))((((((.((((((((((((....))))........)).))))))))))))..)))))).))))))))))..))).)))))..)).))))))).)).))))))))..)).....))).)))).))).)))))).

Structure

u   u   u   -    g   -----  -a        -  G       A  -u  c   u   ua    ac      a  a    ---------------------------------------------------------------------------u   g    -   -----    ua 
 uga gcg uca cagu uac     ag  UGUGGAUA UA GAGGGUU GU  ag aca aua  caaa  ccauuu au gagu                                                                            ucu ugag agc     aucu  u
 ||| ||| ||| |||| |||     ||  |||||||| || ||||||| ||  || ||| |||  ||||  |||||| || ||||                                                                            ||| |||| |||     ||||   
 acu ugu agu guua aug     uc  ACACCUAU GU UUCCCGA Ca  uc ugu ugu  guuu  gguaaa ua cuca                                                                            aga gcuu ucg     uaga  u
a   -   c   u    g   auuau  ca        C  A       C  uu  -   u   cc    --      c  -    uaccgguaguuuuacgucaacuaacuugugccaacaaacuagagcuuaucgguuguuagauguuauucaacaaacu   -    a   guugu    ug 

Annotation confidence High

Genome context

MA_10433553: 989-1264 [-]

Mature pab-miR946f-5p

• Accession: MIMAT0044890
• Description: Picea abies pab-miR946f-5p mature miRNA
• Sequence: 24 - UGUGGAUAUAGGAGGGUUAGU - 44
• Evidence: experimental ; Illumina [1]

Mature pab-miR946f-3p

• Accession: MIMAT0057613
• Description: Picea abies pab-miR946f-3p mature miRNA
• Sequence: 227 - CCAGCCCUUAUGCUAUCCACA - 247
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918