Stem-loop pab-MIR946h

Accession

MI0036794

Description

Picea abies pab-MIR946h precursor miRNA

Literature search

1 open access papers mention pab-MIR946h
(4 sentences)

Sequence

144128 reads, 4145.0 reads per million, 102 experiments

uacagaUGUGGAUAUAGGAGGGUUAGGuaauguaauguacacaacccauuuaauugaaauggcacgacagccuucuagauuguuacuagaacgcuccagaucugccuuguuuauuaauuaagcgaguuguugguaugcuuuuucCAACCCUUCUUCUAUCCACAUUcgua
(((.((((((((((.(((((((((.((....((...(((((((((.(.((((((((((((((((.((((((.((((((.......)))))).)))...).))))))..)))..))))))))).).)))))..)))))).....)))))))))))..)))))))))).)))

Structure

   a          -U         A  -uaau  aau    --     c a         --   --    c  - ---   c      au 
uac gaUGUGGAUA  AGGAGGGUU GG     gu   guac  acaac c uuuaauuga  aau  ggca ga c   agc uucuag  u
||| ||||||||||  ||||||||| ||     ||   ||||  ||||| | |||||||||  |||  |||| || |   ||| ||||||  g
aug UUACACCUAU  UCUUCCCAA Cc     cg   uaug  uguug g gaauuaauu  uug  ccgu cu g   ucg aagauc  u
   c          CU         -  uuuuu  ---    gu     a c         au   uu    -  a acc   c      au 

Annotation confidence High

Genome context

MA_875176: 5480-5649 [+]

Mature pab-miR946h-5p

• Accession: MIMAT0044892
• Description: Picea abies pab-miR946h-5p mature miRNA
• Sequence: 7 - UGUGGAUAUAGGAGGGUUAGG - 27
• Evidence: experimental ; Illumina [1]

Mature pab-miR946h-3p

• Accession: MIMAT0057614
• Description: Picea abies pab-miR946h-3p mature miRNA
• Sequence: 145 - CAACCCUUCUUCUAUCCACAUU - 166
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918