Stem-loop pab-MIR949b

Accession

MI0036795

Description

Picea abies pab-MIR949b precursor miRNA

Sequence

35177 reads, 950.0 reads per million, 94 experiments

agcggaaggagaaggagagcuucUCCCGGGAAUCCAAUGGGCCUUccaaugcgugaaaggcguucaagaggaaGGCACAUUUGAUUCCUAGAGAagcucugguucuccgaguu
.((....((((((..((((((((((..(((((((.((((.((((((((((((.......))))).....))))))).)))).))))))).))))))))))..))))))..)).

Structure

a  ggaa      gg          CC       C    G       -----     gu 
 gc    ggagaa  agagcuucUC  GGGAAUC AAUG GCCUUcc     aaugc  g
 ||    ||||||  ||||||||||  ||||||| |||| |||||||     |||||  a
 ug    ccucuu  ucucgaAGAG  UCCUUAG UUAC CGGaagg     uugcg  a
u  --ag      gg          -A       U    A       agaac     ga 

Annotation confidence High

Genome context

MA_189416: 8497-8609 [-]

Mature pab-miR949b-5p

• Accession: MIMAT0044893
• Description: Picea abies pab-miR949b-5p mature miRNA
• Sequence: 24 - UCCCGGGAAUCCAAUGGGCCUU - 45
• Evidence: experimental ; Illumina [1]

Mature pab-miR949b-3p

• Accession: MIMAT0057615
• Description: Picea abies pab-miR949b-3p mature miRNA
• Sequence: 74 - GGCACAUUUGAUUCCUAGAGA - 94
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918