Stem-loop pab-MIR949a

Accession

MI0036796

Description

Picea abies pab-MIR949a precursor miRNA

Sequence

8623 reads, 286.0 reads per million, 72 experiments

gaaggagagccUCUCCGGGAAUCCAAUGCGCCUuccgcuugaacgccuuucaacgcgccugcuaugcgugagagcgcguuuaagagaaagGUGUAUUGAUUCCCGGAGAAGcucugguuc
(((..(((((.((((((((((((.((((((((((.(.(((((((((((((((.((((.......)))))))))).))))))))).).)))))))))))))))))))))).)))))..)))

Structure

   gg     c            C          c g         -      a    cc 
gaa  agagc UCUCCGGGAAUC AAUGCGCCUu c cuugaacgc cuuuca cgcg  u
|||  ||||| |||||||||||| |||||||||| | ||||||||| |||||| ||||  g
cuu  ucucG AGAGGCCCUUAG UUAUGUGgaa g gaauuugcg gagagu gcgu  c
   gg     A            -          a a         c      -    au 

Annotation confidence Medium

Genome context

MA_136029: 10155-10274 [-]

Mature pab-miR949a-5p

• Accession: MIMAT0044894
• Description: Picea abies pab-miR949a-5p mature miRNA
• Sequence: 12 - UCUCCGGGAAUCCAAUGCGCCU - 33
• Evidence: experimental ; Illumina [1]

Mature pab-miR949a-3p

• Accession: MIMAT0057616
• Description: Picea abies pab-miR949a-3p mature miRNA
• Sequence: 91 - GUGUAUUGAUUCCCGGAGAAG - 111
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918