Stem-loop pab-MIR950c

Accession

MI0036798

Description

Picea abies pab-MIR950c precursor miRNA

Literature search

1 open access papers mention pab-MIR950c
(5 sentences)

Sequence

561850 reads, 11202.0 reads per million, 102 experiments

auggagaggaagggaaaguggucuUCACGUCAGGGCCACGAUGGUUuauuuaccagguaucaauaaaccauaguggcacaggcgagaagAGCACCUUCGCUUUCGUUUcgau
((.((((.((((((((.(((.(((((.((((...(((((.(((((((((((((...)))..)))))))))).)))))...)))).))))).))).))).))))).)))).))

Structure

  g    g     -   a   g     A    AGG     G          --   c 
au gaga gaagg gaa gug ucuUC CGUC   GCCAC AUGGUUuauu  uac  
|| |||| ||||| ||| ||| ||||| ||||   ||||| ||||||||||  ||| a
ua cUUU CUUUC CUU CAC Agaag gcgg   cggug uaccaaauaa  aug  
  g    G     G   C   G     a    aca     a          cu   g 

Annotation confidence Low

Genome context

MA_10314799: 3800-3911 [+]

Mature pab-miR950c-5p

• Accession: MIMAT0044896
• Description: Picea abies pab-miR950c-5p mature miRNA
• Sequence: 25 - UCACGUCAGGGCCACGAUGGUU - 46
• Evidence: experimental ; Illumina [1]

Mature pab-miR950c-3p

• Accession: MIMAT0057618
• Description: Picea abies pab-miR950c-3p mature miRNA
• Sequence: 90 - AGCACCUUCGCUUUCGUUU - 108
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918