Stem-loop pab-MIR950d

Accession

MI0036799

Description

Picea abies pab-MIR950d precursor miRNA

Literature search

1 open access papers mention pab-MIR950d
(5 sentences)

Sequence

21262 reads, 603.0 reads per million, 100 experiments

gaagagaaaguguucuUGACAUCUGGGCCACGAUGGUUuguuuaccauuuuaugucuauaaacuaucguugccAGACGACACGAGCACCUUCgccuuc
((((.(((.((((((.((.(.(((((.(.((((((((((((..((........))..)))))))))))).)))))).).)).)))))).)))..))))

Structure

    -a   a      u  A A     G C            uu  cau 
gaag  gaa guguuc UG C UCUGG C ACGAUGGUUugu  ac   u
||||  ||| |||||| || | ||||| | ||||||||||||  ||    
cuuc  CUU CACGAG AC G AGAcc g ugcuaucaaaua  ug   u
    cg   C      C  A C     - u            uc  uau 

Annotation confidence Low

Genome context

MA_10432994: 23726-23823 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pab-MIR950d

Mature pab-miR950d-5p

• Accession: MIMAT0044897
• Description: Picea abies pab-miR950d-5p mature miRNA
• Sequence: 17 - UGACAUCUGGGCCACGAUGGUU - 38
• Evidence: experimental ; Illumina [1]

Mature pab-miR950d-3p

• Accession: MIMAT0057619
• Description: Picea abies pab-miR950d-3p mature miRNA
• Sequence: 74 - AGACGACACGAGCACCUUC - 92
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918