Stem-loop pab-MIR950e

Accession

MI0036800

Description

Picea abies pab-MIR950e precursor miRNA

Literature search

1 open access papers mention pab-MIR950e
(5 sentences)

Sequence

164512 reads, 3695.0 reads per million, 102 experiments

guggagaagaaagcgaagguguucuUCACGUCUGGGCCGCGAUGGUUuguuuuacaaauaaaccaucugcccCAGACGAGAAGAGCACCUUCGccuucguuuac
(((((((((...(((((((((((((((.((((((((.((.((((((((((((...)))))))))))))).)))))))).))))))))))))))))))).)))))

Structure

     -    aaa               A        C  C            u 
gugga gaag   gcgaagguguucuUC CGUCUGGG CG GAUGGUUuguuu  
||||| ||||   ||||||||||||||| |||||||| || |||||||||||| a
cauuu cuuc   cGCUUCCACGAGAAG GCAGACcc gu cuaccaaauaaa  
     g    ---               A        c  -            c 

Annotation confidence Low

Genome context

MA_10432994: 24195-24298 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pab-MIR950e

Mature pab-miR950e-5p

• Accession: MIMAT0044898
• Description: Picea abies pab-miR950e-5p mature miRNA
• Sequence: 26 - UCACGUCUGGGCCGCGAUGGUU - 47
• Evidence: experimental ; Illumina [1]

Mature pab-miR950e-3p

• Accession: MIMAT0057620
• Description: Picea abies pab-miR950e-3p mature miRNA
• Sequence: 73 - CAGACGAGAAGAGCACCUUCG - 93
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918