Stem-loop pab-MIR950f

Accession

MI0036801

Description

Picea abies pab-MIR950f precursor miRNA

Literature search

1 open access papers mention pab-MIR950f
(5 sentences)

Sequence

586380 reads, 12023.0 reads per million, 102 experiments

gugaggaagcgaaauuguucuUCACGUCAGGGCCACGAUGGUUuauaggucucaguaaaCCAUGGUGGCUCGGACGAGAAGagcacauucguuuucguuugc
....(((((((((..((((((((.((((.(((((((.(((((((((........))))))))).))))))).)))).))))))))..)))))))))......

Structure

--guga         au        A    A       G         agg 
      ggaagcgaa  uguucuUC CGUC GGGCCAC AUGGUUuau   u
      |||||||||  |||||||| |||| ||||||| |||||||||    
      cuuuugcuu  acgaGAAG GCAG CUCGGUG UACCaaaug   c
cguuug         ac        A    G       G         acu 

Annotation confidence High

Genome context

MA_7889178: 2687-2788 [-]

Mature pab-miR950f-5p

• Accession: MIMAT0044899
• Description: Picea abies pab-miR950f-5p mature miRNA
• Sequence: 22 - UCACGUCAGGGCCACGAUGGUU - 43
• Evidence: experimental ; Illumina [1]

Mature pab-miR950f-3p

• Accession: MIMAT0057621
• Description: Picea abies pab-miR950f-3p mature miRNA
• Sequence: 60 - CCAUGGUGGCUCGGACGAGAAG - 81
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918