Stem-loop pab-MIR950i

Accession

MI0036804

Description

Picea abies pab-MIR950i precursor miRNA

Literature search

1 open access papers mention pab-MIR950i
(5 sentences)

Sequence

512963 reads, 12305.0 reads per million, 102 experiments

gaaagcgaagguggucuUGACGUCUGGUCCACGAUGGUUuauuuaccauguaucaauaaaCCAUCGCGGACAGACGACACGagcaccuucaccuuc
(((.(.(((((((.((.((.((((((.(((.(((((((((((((((...)))..)))))))))))).))))))))).)).)).))))))).).)))

Structure

   a c       g  u  A      G   A            --   c 
gaa g gaaggug uc UG CGUCUG UCC CGAUGGUUuauu  uac  
||| | ||||||| || || |||||| ||| ||||||||||||  ||| a
cuu c cuuccac aG AC GCAGAC AGG GCUACCaaauaa  aug  
   c a       g  C  A      -   C            cu   u 

Annotation confidence High

Genome context

MA_136180: 5016-5111 [+]

Mature pab-miR950i-5p

• Accession: MIMAT0044902
• Description: Picea abies pab-miR950i-5p mature miRNA
• Sequence: 18 - UGACGUCUGGUCCACGAUGGUU - 39
• Evidence: experimental ; Illumina [1]

Mature pab-miR950i-3p

• Accession: MIMAT0057624
• Description: Picea abies pab-miR950i-3p mature miRNA
• Sequence: 61 - CCAUCGCGGACAGACGACACG - 81
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918