miRBase entry: pab-MIR11407a

Stem-loop pab-MIR11407a


Accession
MI0036805
Description
Picea abies pab-MIR11407a precursor miRNA


Sequence

372 reads, 32.0 reads per million, 66 experiments
uuuguuuagacuuucgccAAAACUCUGCGAGCGUCAACCcauuuauccgugcuuccuuguuugguuuuguuagacgcugaaugcggugguauuguauacaagggUAGAUGUUCGCUGGGUUUUUGAcgaaauaccuauaacaaa
.((((((((..((((((.(((((((.(((((((((.((((...((((.(((((.((.((((((((.((....)).)))))))).)).))))).).)))...)))).))))))))).))))))).).)))))...))).))))).

Structure
u     -   -ac     - c       U         A    auu   - c     u  u        u  g 
 uuguu uag   uuucg c AAAACUC GCGAGCGUC ACCc   uau c gugcu cc uguuuggu uu u
 ||||| |||   ||||| | ||||||| ||||||||| ||||   ||| | ||||| || |||||||| ||  
 aacaa auc   aaagc G UUUUGGG CGCUUGUAG Uggg   aua g uaugg gg guaagucg ag u
a     u   cau     A U       U         A    aac   u u     u  c        c  a 


Annotation confidence High
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Genome context
MA_8058092: 2451-2594 [-]

Database links

Mature pab-miR11407a-5p

Accession MIMAT0044903
Description Picea abies pab-miR11407a-5p mature miRNA
Sequence 19 - AAAACUCUGCGAGCGUCAACC - 39
Evidence experimental
Illumina [1]

Mature pab-miR11407a-3p

Accession MIMAT0057625
Description Picea abies pab-miR11407a-3p mature miRNA
Sequence 105 - UAGAUGUUCGCUGGGUUUUUGA - 126
Evidence experimental
unknown

References

  1. PubMed ID: 26318183
    Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
    "Xia R, Xu J, Arikit S, Meyers BC"
    "Mol Biol Evol (2015) 32:2905-2918