Stem-loop pab-MIR11409a

Accession

MI0036807

Description

Picea abies pab-MIR11409a precursor miRNA

Sequence

875 reads, 79.0 reads per million, 83 experiments

uauuaaaccaacauagauccaucuuAACCCCGGAUCUAUCAAGCUCugacagggaucaaaucucucgaggugaaagcuuuuuuuaaaguacacaacuugaggaaagguuaaagguuuucaacucgagagauuugaucccucuaggcACUUGAUAGAUCCGGAGUUAAgauguaucuauguuggucuagua
(((((.((((((((((((.(((((((((.((((((((((((((..((...(((((((((((((((((((.(((((((((((............(((((......)))))))))))))))).)))))))))))))))))))...))..)))))))))))))).))))))))).)))))))))))).)))))

Structure

     a            c         C              CU  gac                   g           uuuaaaguacac     ga 
uauua accaacauagau caucuuAAC CCGGAUCUAUCAAG  Cu   agggaucaaaucucucgag ugaaagcuuuu            aacuu  g
||||| |||||||||||| ||||||||| ||||||||||||||  ||   ||||||||||||||||||| |||||||||||            |||||   
augau ugguuguaucua guagAAUUG GGCCUAGAUAGUUC  gg   ucccuaguuuagagagcuc acuuuuggaaa            uugga  g
     c            u         A              Ac  auc                   a           ------------     aa 

Annotation confidence Medium

Genome context

MA_5615750: 211-400 [+]

Mature pab-miR11409a-5p

• Accession: MIMAT0044905
• Description: Picea abies pab-miR11409a-5p mature miRNA
• Sequence: 26 - AACCCCGGAUCUAUCAAGCUC - 46
• Evidence: experimental ; Illumina [1]

Mature pab-miR11409a-3p

• Accession: MIMAT0057626
• Description: Picea abies pab-miR11409a-3p mature miRNA
• Sequence: 147 - ACUUGAUAGAUCCGGAGUUAA - 167
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918