Stem-loop pab-MIR159f

Accession

MI0036808

Description

Picea abies pab-MIR159f precursor miRNA

Literature search

2 open access papers mention pab-MIR159f
(6 sentences)

Sequence

773 reads, 151.0 reads per million, 44 experiments

aagggccgcguggggaugauucAACUGCUGGUUCAUGGACUCUauuaucuuguacuguucaaggaccuguuuucguggcaagauaauggUGUGCAUGACACAGGAGUUGUauugccacuacgcaguuuuu
((((((.((((((((.((((.(((((.(((..(((((.((.((((((((((((((....((......)).....)).)))))))))))).)).)))))..))).))))).)))))).)))))).))))))

Structure

      c      -  a    u     G   GU     G  U            -  -uguu  ag 
aagggc gcgugg gg ugau cAACU CUG  UCAUG AC CUauuaucuugu ac     ca  g
|||||| |||||| || |||| ||||| |||  ||||| || |||||||||||| ||     ||   
uuuuug cgcauc cc guua GUUGA GAC  AGUAC UG gguaauagaacg ug     gu  a
      a      a  -    U     G   AC     G  U            g  cuuuu  cc 

Annotation confidence High

Genome context

MA_10425892: 1424-1553 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from pab-MIR159f

Mature pab-miR159f-5p

• Accession: MIMAT0044906
• Description: Picea abies pab-miR159f-5p mature miRNA
• Sequence: 23 - AACUGCUGGUUCAUGGACUCU - 43
• Evidence: experimental ; Illumina [1]

Mature pab-miR159f-3p

• Accession: MIMAT0057627
• Description: Picea abies pab-miR159f-3p mature miRNA
• Sequence: 90 - UGUGCAUGACACAGGAGUUGU - 110
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918