Stem-loop pab-MIR159h

Accession

MI0036810

Description

Picea abies pab-MIR159h precursor miRNA

Literature search

2 open access papers mention pab-MIR159h
(6 sentences)

Sequence

1204 reads, 146.0 reads per million, 65 experiments

aagggccguguggggaugauucAACUGCUGGUUCAUGGAUUCUauuaucuuguacuguucaaggaucuguuuucgcggcaggauaauggUGUGCAUGACACAGGAGUUGUauugccacuacgcuguuuuu
((((((.((((((((.((((.(((((.(((..(((((.((.(((((((((((..((((....(((......)))))))))))))))))).)).)))))..))).))))).)))))).)))))).))))))

Structure

      c      -  a    u     G   GU     G  U           ua    ucaa   uc 
aagggc gugugg gg ugau cAACU CUG  UCAUG AU CUauuaucuug  cugu    gga  u
|||||| |||||| || |||| ||||| |||  ||||| || |||||||||||  ||||    |||   
uuuuug cgcauc cc guua GUUGA GAC  AGUAC UG gguaauaggac  ggcg    cuu  g
      u      a  -    U     G   AC     G  U           --    ----   uu 

Annotation confidence High

Genome context

MA_10425892: 2555-2684 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from pab-MIR159h

Mature pab-miR159h-5p

• Accession: MIMAT0044908
• Description: Picea abies pab-miR159h-5p mature miRNA
• Sequence: 23 - AACUGCUGGUUCAUGGAUUCU - 43
• Evidence: experimental ; Illumina [1]

Mature pab-miR159h-3p

• Accession: MIMAT0057629
• Description: Picea abies pab-miR159h-3p mature miRNA
• Sequence: 90 - UGUGCAUGACACAGGAGUUGU - 110
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918