Stem-loop pab-MIR159i

Accession

MI0036811

Description

Picea abies pab-MIR159i precursor miRNA

Literature search

2 open access papers mention pab-MIR159i
(6 sentences)

Sequence

1216 reads, 150.0 reads per million, 65 experiments

gaagggccguguggggaugauucAACUGCUGGUUCAUGGAUUCUauuaucuuguacuguucaaggaucuguuuucguggcaagauaauggUGUGCAUGACACAGGAGUUGUauugccacuacgcuguuu
(((.(((.((((((.((((...(((((.(((..(((((.((.((((((((((((......((.(((......))).)))))))))))))).)).)))))..))).))))))))).)))).))))).)))

Structure

   g   c  -    g    auu     G   GU     G  U            acuguu  a   uc 
gaa ggc gu gugg gaug   cAACU CUG  UCAUG AU CUauuaucuugu      ca gga  u
||| ||| || |||| ||||   ||||| |||  ||||| || ||||||||||||      || |||   
uuu ucg ca cacc uuaU   GUUGA GAC  AGUAC UG gguaauagaacg      gu cuu  g
   g   -  u    g    ---     G   AC     G  U            ------  g   uu 

Annotation confidence High

Genome context

MA_10425892: 5792-5920 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from pab-MIR159i

Mature pab-miR159i-5p

• Accession: MIMAT0044909
• Description: Picea abies pab-miR159i-5p mature miRNA
• Sequence: 24 - AACUGCUGGUUCAUGGAUUCU - 44
• Evidence: experimental ; Illumina [1]

Mature pab-miR159i-3p

• Accession: MIMAT0057630
• Description: Picea abies pab-miR159i-3p mature miRNA
• Sequence: 91 - UGUGCAUGACACAGGAGUUGU - 111
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918