Stem-loop pab-MIR11410

Accession

MI0036812

Description

Picea abies pab-MIR11410 precursor miRNA

Sequence

aaguaugucacucgaagaagucaugcuaggcuugcucagcgucuugcuggacuugcaaaucuguauugguuuaugagaacuugcucgauuugcaacuuuguuuucauuauggcaauuugccauaagcaaagacagacuugcaacacuaccuugguuuaugacaaauugccauaaaccuaagcaaaguugcaacucuaauaaguuaccauaaaucaaggcagacuuguaaguccagcAAGAGGCCGAGUAAACAUAGGuugacuucuuccgaccacauacuu
((((((((...((((((((((((..(((.(.((((((.((.(((((((((((((((((.(((((.((((((((((..((((((...((.((((((((((((((...(((((((((((((.(((((((.(((..((..........))..))).))))))).)))))))))))))....)))))))))))))).))...))))))..)))))))))).))))).))))))))))))))))).)).)))))).).)))..))))))))).)))..))))))))

Structure

        cac   -         ug   g c      a  g                 a     a          ag      cuc  u              -uca             c       a   ac  acuu 
aaguaugu   ucg aagaaguca  cua g uugcuc gc ucuugcuggacuugcaa ucugu uugguuuaug  aacuug   ga uugcaacuuuguuu    uuauggcaauuug cauaagc aag  ag    g
||||||||   ||| |||||||||  ||| | |||||| || ||||||||||||||||| ||||| ||||||||||  ||||||   || ||||||||||||||    ||||||||||||| ||||||| |||  ||     
uucauaca   agc uucuucagu  GAU C AAUGAG CG AGAAcgaccugaauguu agacg aacuaaauac  uugaau   cu aacguugaaacgaa    aauaccguuaaac guauuug uuc  uc    c
        -cc   c         uG   A A      C  G                 c     g          ca      aau  c              ucca             a       g   ca  acaa 

Annotation confidence Not enough data

Genome context

MA_886446: 1973-2253 [-]

Mature pab-miR11410

• Accession: MIMAT0044910
• Description: Picea abies pab-miR11410 mature miRNA
• Sequence: 237 - AAGAGGCCGAGUAAACAUAGG - 257
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918