Stem-loop pab-MIR482h

Accession

MI0036817

Description

Picea abies pab-MIR482h precursor miRNA

Literature search

1 open access papers mention pab-MIR482h
(5 sentences)

Sequence

13359 reads, 1007.0 reads per million, 98 experiments

cuuaugggaguagucgaAAUGGGUAGAUUGGAAUGACCucugccugauucuucauauggauguggcggUCUUUUCAGUUCUACCCAUUUCcgcuauuccacuaag
((((..((((((((.((((((((((((((((((.((((...(((..((((.......))))..))))))).)))))).)))))))))))).))))))))..))))

Structure

    ug        c            -      U    ucu   ug    uu 
cuua  ggaguagu gaAAUGGGUAGA UUGGAA GACC   gcc  auuc  c
||||  |||||||| |||||||||||| |||||| ||||   |||  ||||  a
gaau  ccuuaucg CUUUACCCAUCU GACUUU CUgg   cgg  uagg  u
    ca        c            U      U    ---   ug    ua 

Annotation confidence High

Genome context

MA_76894: 4718-4822 [+]

Mature pab-miR482h-5p

• Accession: MIMAT0044915
• Description: Picea abies pab-miR482h-5p mature miRNA
• Sequence: 18 - AAUGGGUAGAUUGGAAUGACC - 38
• Evidence: experimental ; Illumina [1]

Mature pab-miR482h-3p

• Accession: MIMAT0057635
• Description: Picea abies pab-miR482h-3p mature miRNA
• Sequence: 69 - UCUUUUCAGUUCUACCCAUUUC - 90
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918