Stem-loop pab-MIR11421

Accession

MI0036826

Description

Picea abies pab-MIR11421 precursor miRNA

Sequence

243 reads, 44.0 reads per million, 61 experiments

ugcacauggcuucaaccACUAUUGUGAGCUUUGGUGCAcauucacaagcaugaaagcucacaauaacuauugugaacuuugguacacauucacaaguaugagCACCAGAGCUCACAAGAGUGGUuggagccauaugca
((((.(((((((((((((((.((((((((((((((((.(((........((.((((.(((((((....))))))).)))).))..............))).)))))))))))))))).))))))))))))))).))))

Structure

    c               A                A   ------ucacaagc  g    c       a 
ugca auggcuucaaccACU UUGUGAGCUUUGGUGC cau              au aaag ucacaau a
|||| ||||||||||||||| |||||||||||||||| |||              || |||| |||||||  
acgu uaccgagguUGGUGA AACACUCGAGACCACg gua              ug uuuc aguguua c
    a               G                a   ugaacacuuacaca  g    a       u 

Annotation confidence High

Genome context

MA_77139: 20116-20253 [-]

Mature pab-miR11421-5p

• Accession: MIMAT0044924
• Description: Picea abies pab-miR11421-5p mature miRNA
• Sequence: 18 - ACUAUUGUGAGCUUUGGUGCA - 38
• Evidence: experimental ; Illumina [1]

Mature pab-miR11421-3p

• Accession: MIMAT0057637
• Description: Picea abies pab-miR11421-3p mature miRNA
• Sequence: 103 - CACCAGAGCUCACAAGAGUGGU - 124
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918