Stem-loop pab-MIR11425c

Accession

MI0036833

Description

Picea abies pab-MIR11425c precursor miRNA

Sequence

162788 reads, 3552.0 reads per million, 102 experiments

cgguaaacugcaagaAGAGAAAGUUAUAGCUGUAAUAguuaacuuguuuagaaaacaaugagagcacuUUUACAGCUAUAUCUUUUCCUucuagcuuuuuuacug
(((((((..((.(((((.(((((.(((((((((((.(((...((((((........))))))...))).))))))))))).))))).))))).))...)))))))

Structure

       -cu  a     A     U           U   uaa      uag 
cgguaaa   gc agaAG GAAAG UAUAGCUGUAA Agu   cuuguu   a
|||||||   || ||||| ||||| ||||||||||| |||   ||||||    
gucauuu   cg ucuUC UUUUC AUAUCGACAUU uca   gaguaa   a
       uuu  a     C     U           U   cga      caa 

Annotation confidence High

Genome context

MA_10426750: 1844-1948 [-]

Mature pab-miR11425c-5p

• Accession: MIMAT0044931
• Description: Picea abies pab-miR11425c-5p mature miRNA
• Sequence: 16 - AGAGAAAGUUAUAGCUGUAAUA - 37
• Evidence: experimental ; Illumina [1]

Mature pab-miR11425c-3p

• Accession: MIMAT0057644
• Description: Picea abies pab-miR11425c-3p mature miRNA
• Sequence: 69 - UUUACAGCUAUAUCUUUUCCU - 89
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918