Stem-loop pab-MIR11425e

Accession

MI0036835

Description

Picea abies pab-MIR11425e precursor miRNA

Sequence

268957 reads, 6707.0 reads per million, 102 experiments

guaaaagugccagaAGGAAAAGAUAUAGCAGUcaaaguucucucauuguucuccaaacaagugaacuUUUACUGCUAUAUCUUUUCCUucuugcaauuuuac
((((((.(((.(((((((((((((((((((((.(((((((.((...((((.....)))))).))))))).))))))))))))))))))))).))).))))))

Structure

      g   c                     c       u  cau    c 
guaaaa ugc agaAGGAAAAGAUAUAGCAGU aaaguuc cu   uguu u
|||||| ||| ||||||||||||||||||||| ||||||| ||   |||| c
cauuuu acg ucuUCCUUUUCUAUAUCGUCA UUucaag ga   acaa c
      a   u                     U       u  ---    a 

Annotation confidence High

Genome context

MA_185559: 13925-14026 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from pab-MIR11425e

Mature pab-miR11425e-5p

• Accession: MIMAT0057646
• Description: Picea abies pab-miR11425e-5p mature miRNA
• Sequence: 15 - AGGAAAAGAUAUAGCAGU - 32
• Evidence: experimental ; unknown

Mature pab-miR11425e-3p

• Accession: MIMAT0044933
• Description: Picea abies pab-miR11425e-3p mature miRNA
• Sequence: 68 - UUUACUGCUAUAUCUUUUCCU - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918