Stem-loop pab-MIR11425f

Accession

MI0036836

Description

Picea abies pab-MIR11425f precursor miRNA

Sequence

175089 reads, 4781.0 reads per million, 102 experiments

guaaaagugccagaGGGAAAAGAUAUAGCAGUcaaagugcucucauuguccuccaagcaagugaacuUUUACUGCUAUAUCUUUUCCUucuuacaauuuuac
((((((.((..(((((((((((((((((((((.(((((....(((((((.......)).)))))))))).)))))))))))))))))))))..)).))))))

Structure

      g  cc                     c     gcuc     -  cc 
guaaaa ug  agaGGGAAAAGAUAUAGCAGU aaagu    ucauu gu  u
|||||| ||  ||||||||||||||||||||| |||||    ||||| ||  c
cauuuu ac  ucuUCCUUUUCUAUAUCGUCA UUuca    aguga cg  c
      a  au                     U     ----     a  aa 

Annotation confidence High

Genome context

MA_185559: 14162-14263 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from pab-MIR11425f

Mature pab-miR11425f-5p

• Accession: MIMAT0057647
• Description: Picea abies pab-miR11425f-5p mature miRNA
• Sequence: 15 - GGGAAAAGAUAUAGCAGU - 32
• Evidence: experimental ; unknown

Mature pab-miR11425f-3p

• Accession: MIMAT0044934
• Description: Picea abies pab-miR11425f-3p mature miRNA
• Sequence: 68 - UUUACUGCUAUAUCUUUUCCU - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918