Stem-loop pab-MIR11427a

Accession

MI0036839

Description

Picea abies pab-MIR11427a precursor miRNA

Sequence

10832 reads, 583.0 reads per million, 44 experiments

ugauauucuugauccUCCAUUUUCGCUUUCGGUUUCAuagacuuuuaccuggcccgcaguguucgcuaauaauuuagcgaacacugcacgcuauauagaaguagaugAGACCGAAGGCGAGAAUGGAGCaucaagaauauca
(((((((((((((.((((((((((((((((((((((((..(((((((..((((..((((((((((((((....))))))))))))))..))))..)))))))..)))))))))))))))))))))))).)))))))))))))

Structure

             c                        ag       cc    cc              u 
ugauauucuugau cUCCAUUUUCGCUUUCGGUUUCAu  acuuuua  uggc  gcaguguucgcuaa a
||||||||||||| ||||||||||||||||||||||||  |||||||  ||||  ||||||||||||||  
acuauaagaacua GAGGUAAGAGCGGAAGCCAGAgua  ugaagau  aucg  cgucacaagcgauu a
             C                        ga       au    ca              u 

Annotation confidence High

Genome context

MA_6429974: 233-374 [-]

Mature pab-miR11427a-5p

• Accession: MIMAT0057649
• Description: Picea abies pab-miR11427a-5p mature miRNA
• Sequence: 16 - UCCAUUUUCGCUUUCGGUUUCA - 37
• Evidence: experimental ; unknown

Mature pab-miR11427a-3p

• Accession: MIMAT0044937
• Description: Picea abies pab-miR11427a-3p mature miRNA
• Sequence: 108 - AGACCGAAGGCGAGAAUGGAGC - 129
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918