Stem-loop pab-MIR11429c

Accession

MI0036844

Description

Picea abies pab-MIR11429c precursor miRNA

Sequence

15869 reads, 703.0 reads per million, 61 experiments

aggagcggcauggauagauacuuggAGCAGCAUGACACCAAGGGCaacuauuaugaugguucugcaaagaaguaggguuuuguugcccuuggugucauggggcuccUUGUUUCUAUUCAUGUACAACU
.......(((((((((((.((..(((((..((((((((((((((((((....((..((.((((....)))).))..))...))))))))))))))))))..)))))..)).)))))))))))......

Structure

aggagcg           u  uu     AG                  uauu  ga  g    g 
       gcauggauaga ac  ggAGC  CAUGACACCAAGGGCaac    au  ug uucu c
       ||||||||||| ||  |||||  ||||||||||||||||||    ||  || ||||  
       UGUACUUAUCU UG  ccucg  guacugugguucccguug    ug  au aaga a
-UCAACA           U  UU     gg                  -uuu  gg  g    a 

Annotation confidence Low

Genome context

MA_953581: 2599-2726 [+]

Mature pab-miR11429c-5p

• Accession: MIMAT0044942
• Description: Picea abies pab-miR11429c-5p mature miRNA
• Sequence: 26 - AGCAGCAUGACACCAAGGGC - 45
• Evidence: experimental ; Illumina [1]

Mature pab-miR11429c-3p

• Accession: MIMAT0057654
• Description: Picea abies pab-miR11429c-3p mature miRNA
• Sequence: 107 - UUGUUUCUAUUCAUGUACAACU - 128
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918