Stem-loop pab-MIR11431a

Accession

MI0036847

Description

Picea abies pab-MIR11431a precursor miRNA

Sequence

947 reads, 100.0 reads per million, 79 experiments

acuuauucauucaaguggccaauguucucaggcacugaucuuguaagauuucuucugacaauuucUGGCAACAAGAGGAUUAUUGUAagcucuuaugauuucacauacaggccaauccuuaccagcuuaugauaauccuuuuguugugaggaaugaauguuaacAGGAUCAACACUUGAGCAUAuugggcaguugaaugauuagu
..(((.((((((((.((.(((((((.((((((...(((((((((((.((((.........((((((.((((((((((((((((((((((((..((.((((...(.....)...))))..))..)))))))))))))))))))))))).)))))))))).)).)))))))))...)))))).))))))).)).)))))))).))).

Structure

ac   u        g  g       u      cac         -  g    cuucugaca      G                        cu  -u    uca a 
  uua ucauucaa ug ccaaugu cucagg   ugaucuugu aa auuu         auuucU GCAACAAGAGGAUUAUUGUAagcu  ua  gauu   c u
  ||| |||||||| || ||||||| ||||||   ||||||||| || ||||         |||||| ||||||||||||||||||||||||  ||  ||||   | a
  gau aguaaguu ac gguuAUA GAGUUC   ACUAGGAca uu uaag         uaagga uguuguuuuccuaauaguauucga  au  cuaa   g c
-u   u        g  g       C      ACA         a  g    ---------      g                        cc  uc    ccg a 

Annotation confidence Low

Genome context

MA_10239968: 562-766 [-]

Mature pab-miR11431a-5p

• Accession: MIMAT0057656
• Description: Picea abies pab-miR11431a-5p mature miRNA
• Sequence: 66 - UGGCAACAAGAGGAUUAUUGUA - 87
• Evidence: experimental ; unknown

Mature pab-miR11431a-3p

• Accession: MIMAT0044945
• Description: Picea abies pab-miR11431a-3p mature miRNA
• Sequence: 165 - AGGAUCAACACUUGAGCAUA - 184
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918