Stem-loop pab-MIR11433

Accession

MI0036849

Description

Picea abies pab-MIR11433 precursor miRNA

Sequence

1698 reads, 207.0 reads per million, 63 experiments

ugccCAAAUCCUUCUCUCGUAACAUCUCauuggagaugcuugacuccuaaauuuucaagugauuacauuuaauauggaaaguucucauaaauguaacuuaaaaauuugggAGUCGAGCAUCUCCAAUGGGCuguuacaggaaaaggauuuaggca
((((.((((((((.(((.((((((.((((((((((((((((((((((((((((((.((((...((((((...((((((....)).)))))))))))))).)))))))))))))))))))))))))))))).)))))).))).)))))))).))))

Structure

    C        C   C      U                              c    gau      uaa    -  a 
ugcc AAAUCCUU UCU GUAACA CUCauuggagaugcuugacuccuaaauuuu aagu   uacauu   uaug ga a
|||| |||||||| ||| |||||| |||||||||||||||||||||||||||||| ||||   ||||||   |||| ||  
acgg uuuaggaa agg cauugu GGGUAACCUCUACGAGCUGAggguuuaaaa uuca   auguaa   auac cu g
    a        a   a      C                              a    ---      ---    u  u 

Annotation confidence Low

Genome context

MA_10084369: 2090-2244 [-]

Mature pab-miR11433-5p

• Accession: MIMAT0057658
• Description: Picea abies pab-miR11433-5p mature miRNA
• Sequence: 5 - CAAAUCCUUCUCUCGUAACAUCUC - 28
• Evidence: experimental ; unknown

Mature pab-miR11433-3p

• Accession: MIMAT0044947
• Description: Picea abies pab-miR11433-3p mature miRNA
• Sequence: 111 - AGUCGAGCAUCUCCAAUGGGC - 131
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918