Stem-loop pab-MIR3627d

Accession

MI0036850

Description

Picea abies pab-MIR3627d precursor miRNA

Sequence

11167 reads, 297.0 reads per million, 48 experiments

gaagagggcguucuguguuuggUGCGCAGGGGAGAUGAUACUGUcuuuauauauccuauauguucucuucauuuauucaauuugagaauuacguggagauguaucaaggcAGUGUCUUCUCUCUGCGCAugaaaccuccuguuc
(((.((((......(.((((.((((((((((.(((.(((((((((((.(((((((((((..((((((................))))))...)))).))))))).))))))))))).))))))))))))).))))))))).)))

Structure

   g    cguucu u    g          G   U           u       -    -au      uucauuu 
gaa aggg      g guuu gUGCGCAGGG AGA GAUACUGUcuu auauauc cuau   guucuc       a
||| ||||      | |||| |||||||||| ||| ||||||||||| ||||||| ||||   ||||||        
cuu uccu      c caaa uACGCGUCUC UCU CUGUGAcggaa uauguag ggug   uaagag       u
   g    ------ -    g          -   U           c       a    cau      uuuaacu 

Annotation confidence High

Genome context

MA_84326: 3424-3567 [-]

Mature pab-miR3627d-5p

• Accession: MIMAT0044948
• Description: Picea abies pab-miR3627d-5p mature miRNA
• Sequence: 23 - UGCGCAGGGGAGAUGAUACUGU - 44
• Evidence: experimental ; Illumina [1]

Mature pab-miR3627d-3p

• Accession: MIMAT0057659
• Description: Picea abies pab-miR3627d-3p mature miRNA
• Sequence: 111 - AGUGUCUUCUCUCUGCGCA - 129
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918