Stem-loop pab-MIR3693j

Accession

MI0036852

Description

Picea abies pab-MIR3693j precursor miRNA

Sequence

646 reads, 42.0 reads per million, 73 experiments

gggugcacaugacugcucAUAGAUAGGAUUUUGCUCAUAaucccaugacagcagaucuguuuguuuaaucuacaaacgcccaaauAUGAGCAAAAUCCCAUCUAcgagcaguucaugaccgccc
(((((..(((((((((((.(((((.((((((((((((((..................(((((((.......)))))))......)))))))))))))).))))).)))))).)))))..)))))

Structure

     ca     -      A     A              aucccaugacagcagauc       uu 
gggug  cauga cugcuc UAGAU GGAUUUUGCUCAUA                  uguuugu  a
|||||  ||||| |||||| ||||| ||||||||||||||                  |||||||  a
cccgc  guacu gacgag AUCUA CCUAAAACGAGUAu                  gcaaaca  u
     ca     u      c     C              ------------aaaccc       uc 

Annotation confidence Low

Genome context

MA_338080: 1776-1899 [+]

Mature pab-miR3693j-5p

• Accession: MIMAT0044950
• Description: Picea abies pab-miR3693j-5p mature miRNA
• Sequence: 19 - AUAGAUAGGAUUUUGCUCAUA - 39
• Evidence: experimental ; Illumina [1]

Mature pab-miR3693j-3p

• Accession: MIMAT0057660
• Description: Picea abies pab-miR3693j-3p mature miRNA
• Sequence: 86 - AUGAGCAAAAUCCCAUCUA - 104
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918