Stem-loop pab-MIR3693k

Accession

MI0036853

Description

Picea abies pab-MIR3693k precursor miRNA

Sequence

6669 reads, 420.0 reads per million, 79 experiments

ugagcgugcucaggaacuacuuAUAGAUGGGAUGUUGCUCGUUuaugggcgcuuguaaauucaacaaauggaucugcucgaguguuugaauaaggacuaugaUGAGCAGCCCCCCAUCUAUGAacaguucaugagcaccuacg
..((.(((((((.(((((..(((((((((((..((((((((((.(((((((((((((.(((((.....))))).)))..))))))...........))))))))))))))..)))))))))))..))))).)))))))))...

Structure

-ug  c       g     ac           AU          u    -----------      --   a     a 
   ag gugcuca gaacu  uuAUAGAUGGG  GUUGCUCGUU augg           gcgcuu  gua auuca c
   || ||||||| |||||  |||||||||||  |||||||||| ||||           ||||||  ||| ||||| a
   uc cacgagu cuuga  AGUAUCUACCC  CGACGAGUag uauc           ugugag  cgu uaggu a
gca  -       a     ca           CC          -    aggaauaaguu      cu   c     a 

Annotation confidence High

Genome context

MA_78562: 5958-6100 [+]

Mature pab-miR3693k-5p

• Accession: MIMAT0044951
• Description: Picea abies pab-miR3693k-5p mature miRNA
• Sequence: 23 - AUAGAUGGGAUGUUGCUCGUU - 43
• Evidence: experimental ; Illumina [1]

Mature pab-miR3693k-3p

• Accession: MIMAT0057661
• Description: Picea abies pab-miR3693k-3p mature miRNA
• Sequence: 103 - UGAGCAGCCCCCCAUCUAUGA - 123
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918