Stem-loop pab-MIR11409c

Accession

MI0036855

Description

Picea abies pab-MIR11409c precursor miRNA

Sequence

457 reads, 44.0 reads per million, 78 experiments

uccaucUUAACCCUGGAUCUAUCAAGagucgagaggggucaaaucucuugaggugaaaaccuuuacgugaggaaagguuaaaaguuugcaccucaagAUAUUUGAUCCCUCUUGGCGCuugauagauccaagguuaagaugga
((((((((((((.(((((((((((((.(((((((((((((((((.((((((((((..((((((..(....)..)))))).........)))))))))).))))))))))))))))).))))))))))))).))))))))))))

Structure

            C             a                 c          -------aa      ua g 
uccaucUUAACC UGGAUCUAUCAAG gucgagaggggucaaau ucuugaggug         aaccuu  c u
|||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||         ||||||  |  
agguagaauugg accuagauaguuC CGGUUCUCCCUAGUUUA Agaacuccac         uuggaa  g g
            a             G                 U          guuugaaaa      ag a 

Annotation confidence Low

Genome context

MA_305778: 299-441 [-]

Mature pab-miR11409c-5p

• Accession: MIMAT0057663
• Description: Picea abies pab-miR11409c-5p mature miRNA
• Sequence: 7 - UUAACCCUGGAUCUAUCAAG - 26
• Evidence: experimental ; unknown

Mature pab-miR11409c-3p

• Accession: MIMAT0044953
• Description: Picea abies pab-miR11409c-3p mature miRNA
• Sequence: 98 - AUAUUUGAUCCCUCUUGGCGC - 118
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918