Stem-loop pab-MIR11436b

Accession

MI0036858

Description

Picea abies pab-MIR11436b precursor miRNA

Sequence

916 reads, 129.0 reads per million, 45 experiments

cgucaauaauuuuuguccucugcaAUCCUUUUGAAAGCUUGGCCAugucaauguuugaucgucaguucgacauccccaucAUUGGCAUGGCCAAGCUCUCaaaaagauuguagagagaauuauuuccg
((..(((((((((....((((((((((.((((((.((((((((((((((((((...(((.(((.....)))))).....)))))))))))))))))).)))))).)))))))))))))))))))..))

Structure

  uc         uguc          C      A                  --uuu   c   a 
cg  aauaauuuu    cucugcaAUC UUUUGA AGCUUGGCCAugucaaug     gau guc g
||  |||||||||    |||||||||| |||||| ||||||||||||||||||     ||| ||| u
gc  uuauuaaga    gagauguuag aaaaCU UCGAACCGGUACGGUUAc     cua cag u
  cu         ----          a      C                  uaccc   -   c 

Annotation confidence Low

Genome context

MA_799152: 247-374 [+]

Mature pab-miR11436b-5p

• Accession: MIMAT0044956
• Description: Picea abies pab-miR11436b-5p mature miRNA
• Sequence: 25 - AUCCUUUUGAAAGCUUGGCCA - 45
• Evidence: experimental ; Illumina [1]

Mature pab-miR11436b-3p

• Accession: MIMAT0057665
• Description: Picea abies pab-miR11436b-3p mature miRNA
• Sequence: 81 - AUUGGCAUGGCCAAGCUCUC - 100
• Evidence: experimental ; unknown

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918