Stem-loop pab-MIR11438

Accession

MI0036862

Description

Picea abies pab-MIR11438 precursor miRNA

Sequence

1199 reads, 73.0 reads per million, 91 experiments

cauaacucuaaauccauucaggcaUUUGAAUGCAUAAUCCAUUCcuucauucaucauucucauucuuuuguuuugagugaAUGGAUUAUGCAUUCGAAGUGuuugacggaauggaagcauaug
......((((..(((..(((((((((((((((((((((((((((.((((........................)))).))))))))))))))))).)))))))))).))).))))........

Structure

--cauaac    aa   au          -                 c    uucaucauucu 
        ucua  ucc  ucaggcaUUU GAAUGCAUAAUCCAUUC uuca           c
        ||||  |||  |||||||||| ||||||||||||||||| ||||            
        aggu  agg  aguuuGUGAA CUUACGUAUUAGGUAag gagu           a
guauacga    -a   -c          G                 u    uuuguuuucuu 

Annotation confidence High

Genome context

MA_945816: 4253-4375 [+]

Mature pab-miR11438-5p

• Accession: MIMAT0057668
• Description: Picea abies pab-miR11438-5p mature miRNA
• Sequence: 25 - UUUGAAUGCAUAAUCCAUUC - 44
• Evidence: experimental ; unknown

Mature pab-miR11438-3p

• Accession: MIMAT0044960
• Description: Picea abies pab-miR11438-3p mature miRNA
• Sequence: 81 - AUGGAUUAUGCAUUCGAAGUG - 101
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918