miRBase entry: pab-MIR11441b

Stem-loop pab-MIR11441b


Accession
MI0036867
Description
Picea abies pab-MIR11441b precursor miRNA


Sequence

1030 reads, 79.0 reads per million, 65 experiments
agaAUUGCCGCGUCGUCUUUGGCGuuggaaagagaacgacauuguuuuaauuuuucaauaauguuacaagauugaauggguaaucauuaccauguuuacaggaaauagcccugcgaggaauuagauugguUCGAAGUGAGUACAAUGAUAUugaugacgaugaugcauuggg
.....((((((((((((..((.(((((.........(((.((((.(((((((((((................(((((.(((((...)))))..)))))((((.......)))).))))))))))).))))))).........))))).))..))))))).))..))).....

Structure
agaAU   --  -       UU  G     gaaagagaa   c    u           aauaauguuacaagau     -g     u 
     UGC  CG CGUCGUC  UG CGuug         cga auug uuuaauuuuuc                ugaau  gguaa  
     |||  || |||||||  || |||||         ||| |||| |||||||||||                |||||  ||||| c
     acg  gu gcaguag  AU GUAAC         GCU uggu agauuaaggag                auuug  ccauu  
ggguu   ua  a       uU  A     AUGAGUGAA   -    u           cgucccgauaaaggac     ua     a 


Annotation confidence Low
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Genome context
MA_136716: 21090-21261 [-]

Database links

Mature pab-miR11441b-5p

Accession MIMAT0044965
Description Picea abies pab-miR11441b-5p mature miRNA
Sequence 4 - AUUGCCGCGUCGUCUUUGGCG - 24
Evidence experimental
Illumina [1]

Mature pab-miR11441b-3p

Accession MIMAT0057670
Description Picea abies pab-miR11441b-3p mature miRNA
Sequence 131 - UCGAAGUGAGUACAAUGAUAU - 151
Evidence experimental
unknown

References

  1. PubMed ID: 26318183
    Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
    "Xia R, Xu J, Arikit S, Meyers BC"
    "Mol Biol Evol (2015) 32:2905-2918