Stem-loop pab-MIR11444

Accession

MI0036870

Description

Picea abies pab-MIR11444 precursor miRNA

Sequence

222 reads, 18.0 reads per million, 50 experiments

ugaagcagUAAUCCCUGCUUAAGCAAAUCUuugacagcaaccucaaugguauuggaguggcaacauuuucuacugggugcuguuuagAUUUGGUUAAGCAGGAUUACUucuuca
(((((.((((((((.(((((((.(((((((..(((((((.(((....((((..((((((....)))))).)))))))))))))).))))))).))))))))))))))).)))))

Structure

     c        C       G       uu       a   caau    uu      g 
ugaag agUAAUCC UGCUUAA CAAAUCU  gacagca ccu    ggua  ggagug c
||||| |||||||| ||||||| |||||||  ||||||| |||    ||||  ||||||  
acuuc UCAUUAGG ACGAAUU GUUUAga  uugucgu ggg    ucau  uuuuac a
     u        -       G       -u       -   ----    -c      a 

Annotation confidence High

Genome context

MA_135443: 12925-13038 [-]

Mature pab-miR11444-5p

• Accession: MIMAT0057672
• Description: Picea abies pab-miR11444-5p mature miRNA
• Sequence: 9 - UAAUCCCUGCUUAAGCAAAUCU - 30
• Evidence: experimental ; unknown

Mature pab-miR11444-3p

• Accession: MIMAT0044968
• Description: Picea abies pab-miR11444-3p mature miRNA
• Sequence: 88 - AUUUGGUUAAGCAGGAUUACU - 108
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918