Stem-loop pab-MIR11446

Accession

MI0036874

Description

Picea abies pab-MIR11446 precursor miRNA

Sequence

30206 reads, 1235.0 reads per million, 102 experiments

aauaacgaauggACGGCGAAUGGUUCAAAAUAUucuaguuccaggguauggacuucggcauAUUUUGCACCAUUCACUGUCUuuucguuguu
(((((((((.((((((.(((((((.((((((((.(((((.(((.....))))))..)).)))))))).))))))).)))))).)))))))))

Structure

         u      C       U        u  --   u   g 
aauaacgaa ggACGG GAAUGGU CAAAAUAU cu  agu cca g
||||||||| |||||| ||||||| |||||||| ||  ||| ||| g
uuguugcuu UCUGUC CUUACCA GUUUUAua gg  uca ggu u
         u      A       C        c  cu   -   a 

Annotation confidence High

Genome context

MA_62662: 27845-27936 [+]

Mature pab-miR11446-5p

• Accession: MIMAT0057673
• Description: Picea abies pab-miR11446-5p mature miRNA
• Sequence: 13 - ACGGCGAAUGGUUCAAAAUAU - 33
• Evidence: experimental ; unknown

Mature pab-miR11446-3p

• Accession: MIMAT0044972
• Description: Picea abies pab-miR11446-3p mature miRNA
• Sequence: 62 - AUUUUGCACCAUUCACUGUCU - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918