Stem-loop pab-MIR11448

Accession

MI0036876

Description

Picea abies pab-MIR11448 precursor miRNA

Sequence

728 reads, 36.0 reads per million, 62 experiments

ccacagaguucuugugugUACCGAGGCGCUUGAGGGUGCgccguuagaugagggaucCAACGGCGCACCUUCAAGUGCUccgggauccacgagaaaucugugg
(((((((.((((((((.((.(((.(((((((((((((((((((((.(((.....))).))))))))))))))))))))).))).)).)))))))).)))))))

Structure

       g        u  A   A                     a   g 
ccacaga uucuugug gU CCG GGCGCUUGAGGGUGCgccguu gau a
||||||| |||||||| || ||| ||||||||||||||||||||| ||| g
ggugucu aagagcac ua ggc UCGUGAACUUCCACGCGGCAA cua g
       a        c  g   c                     C   g 

Annotation confidence Medium

Genome context

MA_231706: 5560-5662 [-]

Mature pab-miR11448-5p

• Accession: MIMAT0057675
• Description: Picea abies pab-miR11448-5p mature miRNA
• Sequence: 19 - UACCGAGGCGCUUGAGGGUGC - 39
• Evidence: experimental ; unknown

Mature pab-miR11448-3p

• Accession: MIMAT0044974
• Description: Picea abies pab-miR11448-3p mature miRNA
• Sequence: 58 - CAACGGCGCACCUUCAAGUGCU - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918