miRBase entry: pab-MIR11453

Stem-loop pab-MIR11453


Accession
MI0036881
Description
Picea abies pab-MIR11453 precursor miRNA


Sequence

158 reads, 108.0 reads per million, 33 experiments
aacuCAGACUCGGCCUUGGAAUCGGUcgagggucaacucggacucggacuugggauugacgcggaucgaucugAUUUCAAUGACUCGGUUUacuaa
.....(((((.(((.(((((((((((((((.((((((((((........))))).))))).)...)))).)))))))))).).)).))))).....

Structure
aacuC     C  - C          -    --- g     -     acu 
     AGACU GG C UUGGAAUCGG Ucga   g gucaa cucgg   c
     ||||| || | |||||||||| ||||   | ||||| |||||    
     UUUGG UC G AACUUUAguc agcu   c caguu ggguu   g
aauca     C  A U          u    agg g     a     cag 


Annotation confidence Low
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Genome context
MA_49740: 5670-5765 [+]

Database links

Mature pab-miR11453-5p

Accession MIMAT0044979
Description Picea abies pab-miR11453-5p mature miRNA
Sequence 5 - CAGACUCGGCCUUGGAAUCGGU - 26
Evidence experimental
Illumina [1]

Mature pab-miR11453-3p

Accession MIMAT0057678
Description Picea abies pab-miR11453-3p mature miRNA
Sequence 74 - AUUUCAAUGACUCGGUUU - 91
Evidence experimental
unknown

References

  1. PubMed ID: 26318183
    Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
    "Xia R, Xu J, Arikit S, Meyers BC"
    "Mol Biol Evol (2015) 32:2905-2918